Patch missing id in multiple alignment

alignementseq_multiple.py

@@ -136,7 +136,7 @@ def join_alignments(aleft, aright, _mscore=_mscore, gap=-8):
                 aseqs[len(aleft)+jseq] += aright[jseq][nextj]
         i,j = nexti,nextj
     
-    ret = [ SeqRecord(s) for s in aleft ] + [ SeqRecord(s) for s in aright ]
+    ret = [ SeqRecord(id=s.id, seq="") for s in aleft ] + [ SeqRecord(id=s.id, seq="") for s in aright ]
     for rec, seq in zip(ret, aseqs):
         rec.seq = Seq(seq[::-1])
     return ret

test_alignementseq_multiple.py

@@ -15,7 +15,7 @@ class MultipleAlignTestCase(unittest.TestCase):
     def test_align_from_tree(self):
         aseqs = [ s.seq for s in
                 alignementseq_multiple.multiple_align_from_tree(
-                    (("CHAT", "CAT"), "HER")
+                    ((SeqRecord("CHAT"), SeqRecord("CAT")), SeqRecord("HER"))
                     )]
         aseqs.sort()
 
@@ -28,7 +28,7 @@ class MultipleAlignTestCase(unittest.TestCase):
         import tree_generator
         import alignementseq
 
-        seqs = [ SeqRecord(s) for s in ("CHAT", "CAT", "HER") ]
+        seqs = [ SeqRecord(seq=s) for s in ("CHAT", "CAT", "HER") ]
         tree = tree_generator.tree_build(seqs, alignementseq.vec_align)
         aseqs = alignementseq_multiple.multiple_align_from_linkage_matrix(
                 seqs,