fonction save_alignments

alignementseq_tests.py

@@ -202,6 +202,15 @@ class AlignmentSeqTestCase(unittest.TestCase):
 #             
 #             print("Fine", filename)
 # =============================================================================
+   
+    
+    def save_alignments(self, NameFile):
+        from alignementseq import align2steps
+        for s1, s2, filename in self.get_dataset_heads():
+            score, r1, r2 = align2steps(s1, s2)
+        with open("balibase/" + str(NameFile)+'.fasta', "w") as fd:
+            Bio.SeqIO.write((r1, r2), fd, "fasta")
+    
 
 class PerformanceTestCase(AlignmentSeqTestCase):
     """Performance tests, slow.
@@ -271,7 +280,6 @@ class PerformanceTestCase(AlignmentSeqTestCase):
                 p.terminate()
                 p.join()
                 print("{}: timeout".format(method.__name__))
-            
 
 def load_tests(loader, standard_tests, pattern):
     return unittest.defaultTestLoader.loadTestsFromTestCase(AlignmentSeqTestCase)